Align GVGD

Alignments

We have currently 7 alignments in our library (for ATM, BRCA1, BRCA2, CHEK2, TP53, MLH1 and MSH2)

   - ATM for which the 9 following sequences were used: (Click here to see ATM alignment (last updated 2008/10/28))

* Homo sapiens

* Mus musculus (mouse)

* Sus scrofa (pig)

* Monodelphis domesticus (grey, short tailed opossum)

* Gallus gallus (chicken)

* Xenopus laevis (frog)

* Danio rerio (zebrafish)

* Branchiostoma floridae (lancelet)

* Strongylocentrotus purpuratus (purple sea urchin)

   - BRCA1 for which the 13 following sequences were used: (Click here to see BRCA1 alignment (last updated 2007/11/08))

* Homo sapiens
* Pan troglodytes (chimpanzee)
* Gorilla gorilla
* Pongo pygmaeus (orangutan)
* Macaca mulatta (monkey)
* Mus musculus (mouse)
* Canis lupus familiaris (dog)
* Bos taurus (cow)
* Monodelphis domesticus (grey, short tailed opossum)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Tetraodon nigroviridis (pufferfish - green spotted)
* Strongylocentrotus purpuratus (purple sea urchin)

   - BRCA2 for which the 12 following sequences were used: (Click here to see BRCA2 alignment (last updated 2007/11/08))

* Homo sapiens
* Pan troglodytes (chimpanzee)
* Macaca mulatta (monkey)
* Rattus norvegicus (rat)
* Canis familiaris (dog)
* Canis lupus familiaris (dog)
* Bos taurus (cow)
* Monodelphis domesticus (grey, short tailed opossum)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Tetraodon nigroviridis (pufferfish - green spotted)
* Fugu rubripes (Pufferfish - fugu)
* Strongylocentrotus purpuratus (purple sea urchin)

   - CHEK2 for which the 10 following sequences were used: (Click here to see CHEK2 alignment (last updated 2006/10/11))

* Homo sapiens, Mus musculus (mouse)
* Canis familiaris (dog)
* Bos taurus (cow)
* Monodelphis domesticus (grey, short tailed opossum)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Danio rerio (zebrafish)
* Strongylocentrotus purpuratus (purple sea urchin)
* Ciona intestinalis (sea quirt - tunicate)

   - TP53 for which the 9 following sequences were used : (Click here to see TP53 alignment (last updated 2006/02/27))

* Homo sapiens
* Macaca mulatta (monkey)
* Bos taurus (cow)
* Canis familiaris (dog)
* Mus musculus (mouse)
* Rattus norvegicus (rat)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Brachydanio rerio (zebrafish).

   - MLH1 for which the 11 following sequences were used: (Click here to see MLH1 alignment (last updated 2008/08/08))

* Homo sapiens
* Mus musculus (mouse)
* Rattus norvegicus (rat)
* Canis familiaris (dog)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Danio rerio (zebrafish)
* Tetraodon nigroviridis (pufferfish - green spotted)
* Strongylocentrotus purpuratus (purple sea urchin)
* Ciona intestinalis (sea quirt - tunicate)
* Nematostella vectensis (starlet anemone)

   - MSH2 for which the 14 following sequences were used: (Click here to see MSH2 alignment (last updated 2008/08/08))

* Homo sapiens
* Cercopithecus aethiops (monkey)
* Mus musculus (mouse)
* Rattus norvegicus (rat)
* Canis familiaris (dog)
* Bos taurus (cow)
* Monodelphis domesticus (grey, short tailed opossum)
* Gallus gallus (chicken)
* Xenopus laevis (frog)
* Tetraodon nigroviridis (pufferfish - green spotted)
* Danio rerio (zebrafish)
* Strongylocentrotus purpuratus (purple sea urchin)
* Ciona intestinalis (sea quirt - tunicate)
* Nematostella vectensis (starlet anemone)
   Click here to see BRCA1 and BRCA2 TSMR demonstration
   Click here to see BRCA1 and BRCA2 TSMR demonstration for MS Internet Explorer users

28/10/2008